Command Usage#

Here we present descriptions of all tomoDRGN CLI commands, including for each command:

• the goal or motivation

• example usage given different upstream STA software - “Warp v1 style inputs” which includes Warp v1, RELION v3, NextPYP, and cryoSRPNT - “WarpTools style inputs” which includes WarpTools

• an explanation of all arguments

• common next steps