tomodrgn.commands.downsample#

Downsample an image stack or volume by Fourier cropping

Functions

add_args

collate_particle_tilts

Collate a batch of particle images, optionally with a variable number of tilt images associated with each particle.

downsample_images

Downsample a batch of real space images by Fourier cropping.

main

mkbasedir

Create specified output directory, and all required intermediate directories, that do not yet exist.

warnexists

Warn if a directory exists.

write_downsampled_starfile

Write a STAR file describing a downsampled particle stack (optionally chunked into multiple .mrcs files) to disk.

Classes

ImageDataset

Simple dataset class to rapidly supply and downsample particle images.