tomodrgn.utils.prefix_paths

prefix_paths(mrcs: list[str], datadir: str) → list[str]

Test which of various modifications to the image .mrcs files correctly locates the files on disk. Tries no modification; prepending datadir to the basename of each image; prepending datadir to the full path of each image.

Parameters:

• mrcs – list of strings corresponding to the path to each image file specified in the star file (expected format: the path_to_mrc part of index@path_to_mrc)

• datadir – str corresponding to absolute or relative path to prepend to mrcs

Returns:

list of strings corresponding to the confirmed path to each image file