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tomoDRGN v1.0.1.dev3

Overview
Tutorials
Command Usage
API

Overview
Tutorials
Command Usage
API

Section Navigation

TomoDRGN core modules

tomodrgn.analysis
tomodrgn.beta_schedule
tomodrgn.config
- tomodrgn.config.print_config
- tomodrgn.config.save_config
tomodrgn.convergence
tomodrgn.ctf
- tomodrgn.ctf.compute_ctf
- tomodrgn.ctf.print_ctf_params
tomodrgn.dataset
tomodrgn.dose
tomodrgn.fft
tomodrgn.lattice
- tomodrgn.lattice.EvenLattice
- tomodrgn.lattice.Lattice
tomodrgn.lie_tools
tomodrgn.losses
- tomodrgn.losses.EquivarianceLoss
tomodrgn.models
tomodrgn.mrc
tomodrgn.pose
- tomodrgn.pose.PoseTracker
tomodrgn.set_transformer
tomodrgn.so3_grid
tomodrgn.starfile
tomodrgn.utils

TomoDRGN commands

tomodrgn.commands.analyze
tomodrgn.commands.analyze_volumes
tomodrgn.commands.backproject_voxel
tomodrgn.commands.cleanup
- tomodrgn.commands.cleanup.add_args
- tomodrgn.commands.cleanup.main
tomodrgn.commands.convergence_nn
tomodrgn.commands.convergence_vae
- tomodrgn.commands.convergence_vae.add_args
- tomodrgn.commands.convergence_vae.main
tomodrgn.commands.downsample
tomodrgn.commands.eval_images
- tomodrgn.commands.eval_images.add_args
- tomodrgn.commands.eval_images.main
tomodrgn.commands.eval_vol
- tomodrgn.commands.eval_vol.add_args
- tomodrgn.commands.eval_vol.main
tomodrgn.commands.filter_star
tomodrgn.commands.graph_traversal
tomodrgn.commands.pc_traversal
tomodrgn.commands.subtomo2chimerax
tomodrgn.commands.train_nn
tomodrgn.commands.train_vae
tomodrgn.commands.view_config
- tomodrgn.commands.view_config.add_args
- tomodrgn.commands.view_config.main

API Reference
tomodrgn.losses

tomodrgn.losses#

Classes and functions for handling model loss calculations

Classes

EquivarianceLoss

Equivariance loss for encoder over SO(2) subgroup.

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tomodrgn.lie_tools.so3_entropy_old

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tomodrgn.losses.EquivarianceLoss

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