tomodrgn.convergence.plot_latent_pca

plot_latent_pca(workdir: str, outdir: str, plot_format: Literal['png', 'svg'], epochs: ndarray) → None

Calculates, saves, and plots PC1 vs PC2 for all particles’ latent embeddings at selected epochs

Parameters:

• workdir – path to directory containing tomodrgn training results

• outdir – path to base directory to save outputs

• plot_format – file format with which to save plots

• epochs – array of epochs to analyze

Returns:

None